This function calculates secondary production with the Production:Biomass method.
Usage
calc_prod_pb(
taxaSampleListMass = NULL,
taxaInfo = NULL,
bootNum = NULL,
dateDf = NULL,
taxaSummary = TRUE,
wrap = TRUE,
massValue = "mass",
abunValue = "density",
dateCol = "dateID",
repCol = "repID",
bootList = NULL,
...
)Arguments
- taxaSampleListMass
a data.frame of long format returned from
convert_length_to_mass()function- taxaInfo
data frame of taxonomic information for calculating production
- bootNum
integer. How many bootstrap samples should be constructed
- dateDf
data frame of date information with external predictors for each month. There should be a column name identical to all variables in the growth equation found in taxaInfo data.frame.
- taxaSummary
logical. If TRUE (default) the taxaSummary will be with annual summary information will be returned.
- wrap
logical. Should the dates wrap to create a full year?
- massValue
string of the column name containing the mass measurement
- abunValue
string of the column name containing the abundance or density measurement
- dateCol
string of the column name containing the date information. This can be either a recognized date object (e.g., Date, POSIX) or numeric.
- repCol
string of the column name containing the replicate information
- bootList
list. This is the bootstrapped samples passed from
calc_production()- ...
additional arguments to be passed to the function