This is the main function of the secpRod package. It will calculate secondary production for all groups based on the methods described in the taxa information object. Depending on input values varying summaries are returned.
Usage
calc_production(
taxaSampleListMass = NULL,
infoCols = NULL,
taxaInfo = NULL,
bootNum = 100,
wrap = 1L,
taxaSummary = "full",
...
)Arguments
- taxaSampleListMass
data.frame of sample length-masses and abundances
- infoCols
integer vector; Any columns in the sizeInfo object that are not the taxonomic ID, sampling metadata, or size class columns
- taxaInfo
dataframe (or coercible); The taxonomic information for calculating secondary production. This must include a taxonomic ID column with the same name as that of
taxaSampleListMass- bootNum
integer. The number of bootstrapped samples to create
- wrap
logical should an extra date be added to make a full calendar year?
- taxaSummary
string of
'short','full', or'none'to distinguish the information returned- ...
additional arguments passed to function